RnoEX0078213 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12511846-12512326:+
Coord C1 exon
chr7:12511846-12511981
Coord A exon
chr7:12512061-12512173
Coord C2 exon
chr7:12512255-12512326
Length
113 bp
Sequences
Splice sites
3' ss Seq
TAGAGCCTTTCTGCCCTCAGGCC
3' ss Score
7.86
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTCGTGGCTATTATCTCTGAGGCCTCCAGCTCTGGTGTCTCCCTCCAAGCCGACCGGCGAGTCCAGAACCAGAGACGCCGGGTACACATGACCTTGGAGCTGCCTTGGAGCGCAGACCGAGCCATCCAACAGTTTG
Seq A exon
GCCGCACCCACAGATCCAACCAGGTCTCAGCGCCCGAGTATGTCTTCCTTATCTCCGAGCTGGCAGGGGAGCGCAGGTTCGCCTCCATTGTGGCCAAGCGGCTGGAGAGTCTG
Seq C2 exon
GGTGCTCTGACCCACGGAGATCGACGGGCCACTGAGTCCCGGGACCTGAGCAAGTATAACTTCGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987-'33-38,'33-36,35-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.079 C2=0.167
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(16.1=100)
A:
PF138711=Helicase_C_4=FE(13.3=100)
C2:
PF138711=Helicase_C_4=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGCTATTATCTCTGAGGC
R:
CTCGAAGTTATACTTGCTCAGGTCC
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]