BtaEX6040701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51315129-51317245:-
Coord C1 exon
chr7:51317183-51317245
Coord A exon
chr7:51315797-51315895
Coord C2 exon
chr7:51315129-51315262
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAGTCATAGTTTCTGTACAGGTG
3' ss Score
2.5
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATGTGCACTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTACGTCAACCCAGAAACA
Seq A exon
GTGGCTGCCTTACTATCAGGGGAGTTCCAGGGTCTGATTGAGAAGTTTTATATCATCGATTGCCGCTATCCATATGAGTACCTGGGAGGACACATTCAG
Seq C2 exon
GGAGCATTAAACTTGCACAGTCAAGAAGAACTATATAACTTCTTTCTGAAGAAACCCATTGTCCCTTGGGATAACCAGAAAAGAATAGTCATCGTGTTCCATTGTGAATTCTCCTCTGAGAGGGGTCCCCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-'18-20,'18-19,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.7=84.8)
C2:
PF0058115=Rhodanese=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTCAGGGAAACACCAAG
R:
GGGGACCCCTCTCAGAGGAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]