MmuEX6000925 @ mm9
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34894373-34897932:-
Coord C1 exon
chr18:34897870-34897932
Coord A exon
chr18:34895025-34895123
Coord C2 exon
chr18:34894373-34894506
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAATCATTCTTTGTGTGCAGGTG
3' ss Score
9.22
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGTGTGTGCTGCCAACGGTGCCAGGGAAACACCCGGATCTGAAGTATATCAGCCCAGACACA
Seq A exon
GTGGCTGCTTTGCTGTCTGGAAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGCCACATCCTG
Seq C2 exon
GGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCCGAGAGAGGCCCTCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.0=81.8)
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACACCCGGATCTGAAGT
R:
ATTCGAGGGCCTCTCTCGG
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: