GgaEX6018026 @ galGal3
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:481554-482459:+
Coord C1 exon
chr2:481554-481616
Coord A exon
chr2:481714-481812
Coord C2 exon
chr2:482329-482459
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGCTTTTTGCAGATT
3' ss Score
10.72
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
Seq A exon
ATTGTGTCTGTCCTGACTGGAAAGTTTGCAAGCTTCATTAAGGAGTGTGTGATCATTGACTGTCGCTATCCGTACGAGTACGAAGGAGGACACATCAAG
Seq C2 exon
GGTGCTGTAAACCTCCACATGGAGGAGGATGTGGAAGACTTTCTGCTTAAGAACCCAATCCCTCCCTCGAAGAACAAACGGGTGATCATCGTCTTCCACTGCGAGTTCTCCTCGGAGCGGGGGCCCCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(26.2=84.8)
C2:
PF0058115=Rhodanese=FE(40.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCACACTGTTGATGGGA
R:
AGGAGAACTCGCAGTGGAAGA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]