RnoEX0018904 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117966913-117967526:+
Coord C1 exon
chr8:117966913-117966975
Coord A exon
chr8:117967074-117967172
Coord C2 exon
chr8:117967396-117967526
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTCTCTTCATAGATG
3' ss Score
11.5
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GGTTACCTCTTTCATACGGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
Seq A exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCAATCTCATTAAAGAGTTTGTTATCATTGACTGCCGATACCCATATGAATATGAAGGAGGGCACATCAAG
Seq C2 exon
GGTGCCGTGAACTTGCACATGGAAGAAGAGGTTGAGGAGTTCTTACTCAAGAAACCTATCGTGCCCGCTGACGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTCTCCTCTGAGAGAGGCCCTCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.9=84.8)
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTGGGAAGCATCAGGA
R:
ATCCGAGGGCCTCTCTCAGAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]