DreEX6060728 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14787951-14788620:-
Coord C1 exon
chr13:14788558-14788620
Coord A exon
chr13:14788283-14788381
Coord C2 exon
chr13:14787951-14788196
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTGCTTTTTACAGATG
3' ss Score
11.32
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCTCCTGCACTGCCCACAGTACAAGGAAAACACCAAGAGTTGAAGTACATCACTCCAGAGATT
Seq A exon
ATGGTTAAAGCAATGAGTGGACAGTTTCAAGATCTAGTGGAGAGGCTGTTTGTTATCGACTGCCGTTATCCGTATGAGTATGAAGGCGGCCATATTAAA
Seq C2 exon
GGTGCTCTTAATCTCCACCAAGAGGATCAAATCGAAGACTACTTTTTACGCAGTCCTATTCTCCCTGACTGCCCCAAGAAGCGCGTCCTGCTGATTTTTCACTGTGAATTTTCTTCAGAGCGTGGTCCACGGATGTGTCGCTACGTTAGAGAAAGAGATCGATTTGTGAATGAATACCCCAACCTCCATTACCCCGAACTCTATATCCTGAAAGGAGGCTACAAAGAATTTTTCCAGATTCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.9=84.8)
C2:
PF0058115=Rhodanese=PD(72.2=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCACAGTACAAGGAAAACA
R:
GTGGACCACGCTCTGAAGAAA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]