MmuEX0010359 @ mm9
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131018975-131022824:+
Coord C1 exon
chr2:131018975-131019148
Coord A exon
chr2:131020075-131020173
Coord C2 exon
chr2:131022713-131022824
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTCTAATGGCCTCCTACAGATG
3' ss Score
6.85
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCTCATCATGTTCAGCAAGTGCCAGAGGCTCTTCCGCTCCCCATCCATGCCATGCAGTGTGATCCGACCCATCCTCAAGAGGCTAGAGCGGCCCCAGGACCGGGATGTGCCTGTCCAGAGCAAGCGCAGGAAAAGTGTGACACCCCTGGAAGAGCAGCAGCTTGAAGAACCT
Seq A exon
ATGGTGGCCCTGTTAACAGGCAAGTTCAGCAACATCGTGGAGAAATTTGTCATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq C2 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(21.1=100)
A:
PF0058115=Rhodanese=PU(25.0=81.8)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCATGCAGTGTGATC
R:
GTAGTCGTTAGCTGCACGGTC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: