BtaEX0008045 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51856217-51856844:-
Coord C1 exon
chr13:51856782-51856844
Coord A exon
chr13:51856541-51856639
Coord C2 exon
chr13:51856217-51856350
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCGGCCTCCTGCAGGTG
3' ss Score
10.26
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCTTCCTCCTACAGACTGTGGATGGAAAGCACCAAGACCTCAAGTACATCTCACCAGAAACG
Seq A exon
GTGGTGGCTCTGCTGACAGGCAAGTTCAGCCACATCGTGGAGAAGTTTGTGATTGTTGACTGCAGATACCCCTATGAGTATGAAGGCGGGCACATCAAG
Seq C2 exon
ACTGCTGTGAACCTGCCTCTGGAACGGGATGCCGAGACCTTCCTGCTACAGAGCCCCATCACACCCTGCAGCCTGGATAAGAGAATCATCCTCATTTTCCACTGTGAATTTTCATCTGAGCGGGGCCCCCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.0=81.8)
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAAAGCACCAAGACC
R:
GGCCCCGCTCAGATGAAAATT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development