RnoEX0018916 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123738661-123739303:+
Coord C1 exon
chr3:123738661-123738723
Coord A exon
chr3:123738885-123738983
Coord C2 exon
chr3:123739170-123739303
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCCTGATGGCCTCCTACAGATG
3' ss Score
7.27
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCCTTCCTCCTGCAGACTGTGGATGGCAAACACCAAGACCTCAAGTACATCTCACCAGAAACT
Seq A exon
ATGGTGGCCCTGTTGACAGGCAAGTTCAGCAACATCGTGGAGAAGTTTGTAATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq C2 exon
AATGCTGTGAACTTGCCCCTGGAACCGGATGCCGAGACCTTTCTGCTGAAGCATCCCATCACGCCTTGTAACCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCATCTGAGCGTGGACCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.0=81.8)
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGGATGGCAAACACCA
R:
TGGTCCACGCTCAGATGAGAA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]