MmuEX0010346 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109888874-109889841:+
Coord C1 exon
chr9:109888874-109888936
Coord A exon
chr9:109889032-109889130
Coord C2 exon
chr9:109889711-109889841
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTCTCTCTTCATAGATG
3' ss Score
12.44
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GGTTATCTCTTTAATACAGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
Seq A exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCGGTCTCATTAAAGAGTTTGTTATCATTGACTGCCGATACCCATATGAGTATGAAGGAGGTCACATCAAG
Seq C2 exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.9=84.8)
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTGGGAAGCATCAGGA
R:
ATTCGAGGGCCTCTTTCAGAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types