BtaEX0008038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52261029-52262302:+
Coord C1 exon
chr22:52261029-52261091
Coord A exon
chr22:52261187-52261285
Coord C2 exon
chr22:52262172-52262302
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTGGCTCTTTCTCCACAGATT
3' ss Score
12.02
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GGTTACCTCTTTCATACCGTTGCTGGAAAGCATCAGGATTTAAAATACATCTCTCCAGAAATT
Seq A exon
ATTACATCTGTTTTGAATGGCAAGTTTGCCAACCTCATTAAAGAGTTTGTCATCATCGACTGCCGATACCCATATGAATATGAGGGAGGCCACATCAAG
Seq C2 exon
GGTGCAGTGAACTTGCACATGGAAGAGGAGGTTGAAGAGTTCTTACTCAAGAAGCCTATCGTACCTACGGATGGCAAGCGTGTTATCGTGGTGTTCCACTGCGAGTTCTCTTCTGAGCGCGGCCCTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586_MULTIEX1-11/11=10-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.9=84.8)
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTGCTGGAAAGCATCAG
R:
CGCTCAGAAGAGAACTCGCAG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development