RnoEX0018922 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27531160-27534739:-
Coord C1 exon
chr18:27534677-27534739
Coord A exon
chr18:27531935-27532033
Coord C2 exon
chr18:27531160-27531293
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAATCATTCTTTGTGTGCAGGTG
3' ss Score
9.22
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
Seq A exon
GTGGCTGCATTGCTGTCTGGGAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGTTATCCGTATGAGTACCTGGGAGGACACATTCTG
Seq C2 exon
GGAGCCTTAAACCTGTACAGTCAGAAGGAACTATACGAGTTCTTTCTGAAGAAGCCTGTTGTCCCTGAGGACACCCAGAAGAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCAGAGAGAGGCCCACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'14-18,'14-17,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0058115=Rhodanese=PU(25.0=81.8)
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGAAACACCAGGATCTG
R:
ATTCGTGGGCCTCTCTCTGAG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]