BtaEX6040703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51313474-51315262:-
Coord C1 exon
chr7:51315129-51315262
Coord A exon
chr7:51314597-51314708
Coord C2 exon
chr7:51313474-51314392
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGATTTTCTCTAAAGGTG
3' ss Score
7.89
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GGAGCATTAAACTTGCACAGTCAAGAAGAACTATATAACTTCTTTCTGAAGAAACCCATTGTCCCTTGGGATAACCAGAAAAGAATAGTCATCGTGTTCCATTGTGAATTCTCCTCTGAGAGGGGTCCCCGAAT
Seq A exon
GTGCCGTTCTCTGAGAGAAGAGGACAGGACTCTGAACCAGTATCCTGCCCTGTACTACCCAGAGCTATACATCCTCAAAGGGGGCTACAGAGACTTCTTTCCAGAATATATG
Seq C2 exon
GAGCTGTGTGAACCACAGAGCTACTGCCCGATGCATCACCAGGACCATAAGGCTGAGCTGCTGAGGTGTCGAAACCAGAGCAAAGCATGGGAAGGAGAGCGGCAGCTGCAGGAACAGATTGCCTTACTGGTGAAGGATGTGAGCCCATGATATCAGGTCACCTACTGGCTGCCTGGGACTCACCAAAAGGCACTGTAGAAACCCTGAGGTGAAAGAGGCCATCTTCTATGCAGCCTCTTTTCATTGTAATATGTTAAAAGATGTCAGCAAACCAATAGGCTGCCAAACTAATGAAATCTCAGGCGTGGGATTGGTTACATTTTAGTAGAGCTGCTGGCTAGTGAGGAAGTCCTCGAGCTAGTTTTCTAAGGTTGGAACCTTGGGTTGCATGGAGATTTATGTTGCTTCAGGGGGCTGTTGCATTCCTCTTGCTAACTACTTGCGTCTTCTCAGAGGTCAGCCAGATCTTTTTCCTGGGCTCTGGCTATGCAAGAGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.4=100)
A:
PF0058115=Rhodanese=PD(32.1=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCATTGTCCCTTGGG
R:
AGGTGACCTGATATCATGGGCT
Band lengths:
248-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]