MmuEX6000927 @ mm10
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34732997-34734852:-
Coord C1 exon
chr18:34734719-34734852
Coord A exon
chr18:34733577-34733688
Coord C2 exon
chr18:34732997-34733393
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTTTTCTTTACAGGTG
3' ss Score
13.86
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCCGAGAGAGGCCCTCGAAT
Seq A exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCGGCATTATATTACCCTGAGCTATATATCCTCAAAGGGGGCTACAGAGATTTCTTTCCAGAGTATATG
Seq C2 exon
GAGCTGTGTGACCCACAGAGCTACTGTCCCATGCTTCACCAGGACCACCAGGCTGAGCTGCTGAGCTGGCGAAGCCAGAGCAAGGCCCAGGAAGGGGAGCGGCAGCTGCAGGGACAGATTGCCCTCCTGGTGAAGGGTGCGAGCCCACAATAGTGACTATGACGGTGGCAGTGAAGACACTACAGACCCTGGACAGAAGGAGTCATCTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGGATCTTTGAGTTTGAGGCCAGCCTGGTCTACATGTGACCTTGTCTCAAAAACAAAACAAACAAAATAAAACAAAACCCATTAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'21-25,'21-24,22-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCTGTTGTTCCTCTGG
R:
CACTGCCACCGTCATAGTCAC
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types