RnoEX6058480 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27528354-27531293:-
Coord C1 exon
chr18:27531160-27531293
Coord A exon
chr18:27530409-27530520
Coord C2 exon
chr18:27528354-27530229
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCTTGGATTTTCCTTACAGGTG
3' ss Score
10.06
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GGAGCCTTAAACCTGTACAGTCAGAAGGAACTATACGAGTTCTTTCTGAAGAAGCCTGTTGTCCCTGAGGACACCCAGAAGAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCAGAGAGAGGCCCACGAAT
Seq A exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCAGCATTATACTACCCTGAGCTGTATATCCTCAGAGGGGGCTACAGAGATTTCTTTCCAGAATATATG
Seq C2 exon
GAGCTGTGTGAACCCCAGGGCTACTGTCCTATGCTTCACCAGGACCACCAGGCCGAGCTGCTGAGCTGGCGCAGCCAGAGCAAAGCCCAGGAAGGGGAGCGGCAGCTGCGAGAACAGATTGCCCTCCTGGTGAAGAATGTGAGCCCTCAATAGTGACTATGACGGTGGCAGTGAAGACACTACAACCCTGAACAGGAGTCATCGTCCATGTTGCTAAGCCTATAATTGTATCTGCAAACACACGCATAGCCGGGCGAGCTGCAAGGGCCTTTAGTCCCAGCGCTACGGAGGCAAAGGCAGGAGAATCTTTTGAGTTTGAGGCCAGTCCGGTCTACATGCAAAACAAAGCAAACAACAAGCCCATTAAACAAAAACCTCTAGATGTCTGTGAGCCACAGCCTGTCATGCTGCTGAAGCACTCCTGAATGGGCTTGGTTCCTGTGGAGCTGCTGTGGATCCTCGATGACGAGCAGAGAGGGCTGCGTGGCTTTAGAGGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGACACCCAGAAGAGA
R:
CACTGCCACCGTCATAGTCAC
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]