BtaEX6040767 @ bosTau6
Exon Skipping
Description
Bos taurus matrin 3 (MATR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102486]
Coordinates
chr7:52218128-52236137:+
Coord C1 exon
chr7:52218128-52218184
Coord A exon
chr7:52235364-52235405
Coord C2 exon
chr7:52236085-52236137
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGGTCTTTTTAAAGCTA
3' ss Score
8.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ACCGCGTCCCGCTCGCTTGGAGAGGTACCTCTCGTTTTCCCTCTCCCTTTCTTCAAG
Seq A exon
CTACCCAGAATGGAATCCTGACACTGATACAGGACATACAAT
Seq C2 exon
GTGCTGGAAATGGAAACCTGCAAGGACCAAGACACATGCAGAAAGGCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006756-'2-6,'2-3,9-6=AN
Average complexity
A_C3
Mappability confidence:
100%=89=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTTGGAGAGGTACCTC
R:
CACTCTGCCTTTCTGCATGTG
Band lengths:
100-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]