GgaEX0003114 @ galGal4
Exon Skipping
Gene
ENSGALG00000002478 | MATR3
Description
matrin-3 [Source:RefSeq peptide;Acc:NP_989478]
Coordinates
chr13:1836449-1837628:-
Coord C1 exon
chr13:1837567-1837628
Coord A exon
chr13:1836868-1836909
Coord C2 exon
chr13:1836449-1836552
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTTCTTTTTAAGATA
3' ss Score
11.34
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGTGGAATCACCATATCAATGGAGCGACTCATGGCCGACGCTGTCAGCTGCTGCTTGAAAT
Seq A exon
ATATCCAGAATGGAACCCTGACAGTGATTCAGGACATGGAAT
Seq C2 exon
GGGTGATCCCTTTATGTTGCAGCAGTCCACAAACCCTGCACCAGGAATTCTGGGACCCCCACCACCTCCATTCCACCTGGGAGGGCCTCCTGTTGGGCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGGAGCGACTCATGGC
R:
CCCTCCCAGGTGGAATGGAG
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]