HsaEX0038049 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138650364-138651877:+
Coord C1 exon
chr5:138650364-138650425
Coord A exon
chr5:138651386-138651427
Coord C2 exon
chr5:138651765-138651877
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGGTCTTTTTAAAGCTA
3' ss Score
8.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
Seq A exon
CTACCCAGAATGGAATCCTGACAATGATACAGGACACACAAT
Seq C2 exon
GGGTGATCCATTCATGTTGCAGCAGTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.532 C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGTCACAGTCGTCGATG
R:
CTCTTGGTCCAACTGCTGGTC
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)