DreEX0045228 @ danRer10
Exon Skipping
Gene
ENSDARG00000000394 | matr3l1.1
Description
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
Coordinates
chr14:24796428-24797373:-
Coord C1 exon
chr14:24797312-24797373
Coord A exon
chr14:24796619-24796657
Coord C2 exon
chr14:24796428-24796528
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTGTTATTTTTAGGTA
3' ss Score
11.59
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GAATGGACTCAGCACACAGCTGGGATTCGCCACTCTGAAAACCGGCGACTGCTCCTGCAAAT
Seq A exon
GTACCCCGACTGGGATCCTCAAATGCCTTCTAGCCGCAT
Seq C2 exon
GTCATCATCACTTTCCTTGGACACAAAGAGTCGTTCAGATGGATTGCTGGGCGCTGCTCCTATCGGTAGTCTACAGAGAACAGGGATGAGCTCCAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000394_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.143 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGAAAACCGGCGACTG
R:
GGAGCTCATCCCTGTTCTCTG
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]