BtaEX6040800 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53253947-53256016:+
Coord C1 exon
chr7:53253947-53254102
Coord A exon
chr7:53254458-53254550
Coord C2 exon
chr7:53255594-53256016
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTGAGATCTCTGTTTCACAGTCA
3' ss Score
5.56
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTGCTGGGCCTGGTGGGAGTCCGAAAGGCACTGGAGTGGGTCTTCTCGCCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCGGAGAAGGAGAGAAGCATCCCTGAAAAGGGAGTGGAGCCAGAGTACTCGTTCAGTGGAAATGACAGTGAAGAT
Seq A exon
TCAGAACTGATGTATCAGCCAAAGGCTCCGGAAATCAACATCTCTGTGAATTAGCTGGAGTAGCAGTATGGAGTTGAGACCCAGGAAACTGAG
Seq C2 exon
GTATTTATTCAGGAAGTCAGGAAATTACTGGCCTTTGGCTTAACTGCCAGATGCTCAGTCAGCTGGGAGCCTGGAACACTGGGGCAGGACTGGAAGGCAGCTGGCCAAGACCTCAGTCACCCTCCTGAGCTGGGGGTGGAGAGTGGCAGGGAACAAGCAGGCTTGCTTTGTGGTTAGGAAAGTCTGGTAAGTCAGAGGGACTGACCAGGCCCCATTTACTCTTTACTCCATTAAAGGAACCTAAGTCTAGCAGCCCTTCTCATTTTGAAACTTCTATCCTCACAGATTCTCTTTTATACAATCAGGGGGTTGCCAGGGAACTCTTCTCAGTTTGCGAAAGGGAAAAATGTCCCTCTTTCCAGAATAAGTACTCCTCTATTTTAAAGTGTTTTTACATGTTTAAGAATAAACTTAATTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGGGAGTGGAGCCAGA
R:
AGGAGGGTGACTGAGGTCTTG
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]