MmuEX6001030 @ mm9
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36700390-36715909:+
Coord C1 exon
chr18:36700390-36700545
Coord A exon
chr18:36700853-36700945
Coord C2 exon
chr18:36715652-36715909
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTGGATGTTTCCCCCACAGTCA
3' ss Score
8.31
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTACTGGGCCTGGTGGCCATCCGGAAGGCACTGGAGTGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGGAGACCATCCCCGAGAACAGGTCCGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAGAT
Seq A exon
TCAGAACTGATGTATCAGCCCAAGGCTCCAGAAATCAACATCTCTGTGAATTAGCTGGCGTCACAGTGTGGAGACCTCAGGAAACAGACACAG
Seq C2 exon
GTGGGGTGAACTGAAAGATTGGTATGCAGAAATTAATTGTTTTGAGAAAATCCAGGTTCCACATCCAAGAACTACATGTACGAAGTGGAGAGATGGCTAAGTGGTTAAGAGCAGTTGCTGCTCTTCCTGAGGGCCTGAGTTCAGTTCTCGGGACTCACAGAGGAAGGCTGTAGCTCCAGGGAGATCTGCCATCTCTGGTCTCTGTAAGTGCGCCCACTGATGTGCACATGCCTCACCCCCATATGCACAGAACTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-'21-23,'21-21,23-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.044 C2=NA
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(1.5=13.5)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGAGCACTTGTTCAGT
R:
CCTCAGGAAGAGCAGCAACTG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: