HsaEX6100179 @ hg38
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140372242-140374844:+
Coord C1 exon
chr5:140372242-140372397
Coord A exon
chr5:140372745-140372843
Coord C2 exon
chr5:140374770-140374844
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGGGATCTGTCTTCCACAGTCA
3' ss Score
6.86
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTGCTGGGCCTTGTGGGGGTCCGAAAGGCCCTGGAGAGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGAGAAGCATCCCTGAGAAGGGGCTGGAGCCAGAACACTCATTCAGTGGAAGTGACAGTGAAGAT
Seq A exon
TCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTCTGTGAATTAGCTGGAGTAGGAGTCTGGGAGTGGAGACCCCAGGAAACAGCATGAG
Seq C2 exon
TTCACAGGTGCTTACTCAGGAAGTCAGGACATTTTTGGCCTTTGGCTTAACTTCCAGATGCTCAGTCGGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'25-33,'25-31,27-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.059 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCCTCTGGCTGGATGA
R:
AAGCCGACTGAGCATCTGGAA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains