HsaEX6100179 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139751827-139754595:+
Coord C1 exon
chr5:139751827-139751982
Coord A exon
chr5:139752330-139752428
Coord C2 exon
chr5:139754412-139754595
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGGGATCTGTCTTCCACAGTCA
3' ss Score
6.86
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTGCTGGGCCTTGTGGGGGTCCGAAAGGCCCTGGAGAGGGTCTTCTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGAGAAGCATCCCTGAGAAGGGGCTGGAGCCAGAACACTCATTCAGTGGAAGTGACAGTGAAGAT
Seq A exon
TCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTCTGTGAATTAGCTGGAGTAGGAGTCTGGGAGTGGAGACCCCAGGAAACAGCATGAG
Seq C2 exon
ATGCTCAGTCGGCTTGGGGAAGGACTGAAGGGCAGCTGCCAAGACCTCAGTTACCTCCTGACCTGAGGGTGGAGAGTGGCAGGAAGCAAGCATGTTTGCTGTGCACTTAGGAAAGGCTGGTGAGCCAGAGGGACTGATCAGGCCCCATTCACTCTCTACTCATTAAAAGGTCCTGAGCCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'21-26,'21-24,23-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.059 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGTCTTCTCACCACAGG
R:
GGTAACTGAGGTCTTGGCAGC
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)