BtaEX6040802 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53252926-53254102:+
Coord C1 exon
chr7:53252926-53252994
Coord A exon
chr7:53253199-53253372
Coord C2 exon
chr7:53253947-53254102
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCTTGTTCCCCTAGTTC
3' ss Score
10.22
5' ss Seq
ATGGTGACT
5' ss Score
3.33
Exon sequences
Seq C1 exon
TTCATCCCAATGCCTCTTCTCTATGGCATCTTCCTGTACATGGGGGTGACAGCGATTAGCAGCATCCAG
Seq A exon
TTCACGAAGAGGGTGCAGCTATTATTGATACCAGCGAAGCACCAGCCAGACCTTCTGTTCTTGCGGCATGTGCCCCTGAGCAGGGTCCACCTGTTCACAGCCATCCAGCTTGCCTGCCTGGGTCTGCTTTGGATAATCAAGTCTACCCCTGCAGCTATCATCTTCCCCATCATG
Seq C2 exon
TTGCTGGGCCTGGTGGGAGTCCGAAAGGCACTGGAGTGGGTCTTCTCGCCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCGGAGAAGGAGAGAAGCATCCCTGAAAAGGGAGTGGAGCCAGAGTACTCGTTCAGTGGAAATGACAGTGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.3=100)
A:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATGCCTCTTCTCTATGGC
R:
CTTCACTGTCATTTCCACTGAACG
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]