GgaEX6010915 @ galGal3
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1440205-1441399:+
Coord C1 exon
chr13:1440205-1440273
Coord A exon
chr13:1440929-1441102
Coord C2 exon
chr13:1441232-1441399
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCCTCTCCCTGCAGCTC
3' ss Score
12.63
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
Seq A exon
CTCACAGATCGAGTGCGGCTGCTTCTGATGCCTGCAAAACACCAGCCAGATCACCTCTATCTCCGCCATGTGCCACTGTGCCGGGTGCACCTCTTCACCTTCATCCAGCTGCTGTGCCTGGCCATGCTCTGGGTCATCAAGTCTACCGCGGCTGCCATTGTTTTCCCAGTGATG
Seq C2 exon
CTGCTGGCTCTGGTGGGGATCCGGAAGGCGCTTGAGTGCATCTTCTCCTTGCATGACCTGAGCTGGCTGGACAACAATTTGCCTGCAGCAGCAAGGAAGGAAGCAGAGGGGAAACTGCACAGGAAGCAGGAAGAGCAGGAAAGCAATGCTGATGAAGAGGTGGGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.411
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.2=100)
A:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCGATGCCAGTGCTGTA
R:
TCACCCACCTCTTCATCAGCA
Band lengths:
234-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]