GgaEX6010915 @ galGal4
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:987525-989098:+
Coord C1 exon
chr13:987525-987593
Coord A exon
chr13:988249-988422
Coord C2 exon
chr13:988552-989098
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCCTCTCCCTGCAGCTC
3' ss Score
12.63
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
Seq A exon
CTCACAGATCGAGTGCGGCTGCTTCTGATGCCTGCAAAACACCAGCCAGATCACCTCTATCTCCGCCATGTGCCACTGTGCCGGGTGCACCTCTTCACCTTCATCCAGCTGCTGTGCCTGGCCATGCTCTGGGTCATCAAGTCTACCGCGGCTGCCATTGTTTTCCCAGTGATG
Seq C2 exon
CTGCTGGCTCTGGTGGGGATCCGGAAGGCGCTTGAGTGCATCTTCTCCTTGCATGACCTGAGCTGGCTGGACAACAATTTGCCTGCAGCAGCAAGGAAGGAAGCAGAGGGGAAACTGCACAGGAAGCAGGAAGAGCAGGAAAGCAATGCTGATGAAGAGGTGGGTGATATGCTGGGAGCTGTGCGCTTTTGCAGCCATCCCCAAGGACTCCGCGGTGCAGGGGCTGCACCTCGCTGGGGCATGCAGCTCGGGCAGGAACAGCCAACAGCCCCAGCACAAGGTGCCGAATCCAGATGGAACAGCACCAGAGCTGTGGTGCTTGCATCTGAGGAGCAGCTGTGGGAGCAGGGACAGCAGCAGAGCTGGCAGAGCCGGGCCATGGGCTCAGTACACTCTGTGCTGTAGTGATGCCCAGCGGTAGGCCGAGCAGCTACAGGGGCTGGATCCTGTGAGCACGGCTGCTGGAGGGCGACTGGGAGCACTGCCAACTGCATCACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCGATGCCAGTGCTGTA
R:
TCCCAGCATATCACCCACCTC
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]