BtaEX6041235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63218093-63219528:-
Coord C1 exon
chr7:63219463-63219528
Coord A exon
chr7:63219096-63219242
Coord C2 exon
chr7:63218093-63218200
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGACTCCATGTTTCATACAGCAA
3' ss Score
6.06
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCGTGGGAATGCGAGGAAGAAGAACTGGCTGAGATCCTG
Seq A exon
CAAGGAGAGCTGCCAGATGCAGACAAATATGAAATTAATAAATTCCACTTCAGCGACCTGCCCCTGACGGAACTGGAGCTGGTGAAATGTGGAATTCAGATGTACTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCTCAGGAG
Seq C2 exon
GCCCTGGTGCGGTTCATGTATTCCCTGAGTAAGGGCTACCGCAGGATCACCTACCACAACTGGCGGCACGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGAGGTGTATGGGAAGGA
R:
CACCAGCAAGGAGAACATGGT
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]