RnoEX6058946 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56585424-56586793:+
Coord C1 exon
chr18:56585424-56585489
Coord A exon
chr18:56585621-56585767
Coord C2 exon
chr18:56586686-56586793
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGGACTTCACTCCGGTGCAGCAA
3' ss Score
4.77
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAAACCAGAGAGGTGTATGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATCCTG
Seq A exon
CAAGAAGAACTTCCAGATGCCGAGAAATATGAAATCAACAAGTTTCACTTCAGTGACCTGCCCCTTACGGAACTGGAGCTGGTGAAATGCGGCATACAGATGTACTATGAGCTCAGAGTGGTGGACAAGTTCCACATCCCGCAAGAG
Seq C2 exon
GCCCTGGTGCGCTTCATGTATTCGCTAAGCAAAGGCTACCGGAGGATCACTTACCACAATTGGCGGCATGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(11.5=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGAGGTGTATGGCAAAGA
R:
CATCAGCAAGGAGAACATGGTCT
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]