MmuEX6001893 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61416638-61417967:+
Coord C1 exon
chr18:61416638-61416703
Coord A exon
chr18:61416835-61416981
Coord C2 exon
chr18:61417860-61417967
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGAACTCCACTCCACTGCAGCAA
3' ss Score
4.94
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAAACCAGAGAGGTGTACGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATCCTG
Seq A exon
CAAGGAGAACTTCCAGACGCGGAGTCATACGAAATCAACAAGTTCCACTTCAGCGACCTGCCACTCACGGAGCTGGAGCTGGTGAAGTGCGGCATCCAGATGTACTACGAGCTCAGAGTGGTGGACAAGTTCCACATCCCGCAAGAG
Seq C2 exon
GCCCTGGTGCGCTTCATGTATTCGCTAAGCAAAGGCTACCGGAGAATCACTTACCACAACTGGCGGCATGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGAGGTGTACGGCAAAG
R:
CACCAGCAAGGAGAACATGGT
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: