GgaEX6050548 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53321924-53323783:-
Coord C1 exon
chrZ:53323718-53323783
Coord A exon
chrZ:53322806-53322952
Coord C2 exon
chrZ:53321924-53322031
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACTGTTTTGCCTTTCACAGAAA
3' ss Score
8.89
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CCAACACGAGAAAAGCTGGGGAAGGAGCCAAGTGAGTGTGAGGAAGAGGAGCTGGCAAGTATCCTG
Seq A exon
AAAGAACAACTCCCAGGGCCCACCAAGTTCGAAATCTATGAGTTCCGATTCTCCGATTTTGACTGCACTGAGCTGGAGCTGGTGAAGTGTGGCATTCAGATGTACTACGAGCTTGGCGTGGTGAAGAAGTTCCAGATCCCACAGGAG
Seq C2 exon
GTTCTGGTGAGGTTTGTGTACTCTGTCAGTAAGGGCTACCGGAAGATAACGTACCACAACTGGCGCCATGGCTTCAATGTTGCACAGACCATGTTCACACTTCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACGAGAAAAGCTGGGG
R:
AGAAGTGTGAACATGGTCTGTGC
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]