DreEX6057941 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24722504-24727038:-
Coord C1 exon
chr14:24726973-24727038
Coord A exon
chr14:24726738-24726884
Coord C2 exon
chr14:24722504-24722611
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTTTTCTCTATAGAAT
3' ss Score
10.55
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AACACACGTGAGATGTATGATAAAGAGCCTGACGAATGTGAAGAGGACGAGCTGGAAGATATTCTG
Seq A exon
AATGAAGTGCTGCCAGACTCTGAAGAATCTGAGATCTTTGAGTTTCACTTCTGTGACTTTGAATTCAGTGAACTGGACCTCGTGAAGTGTGGCATCAAGATGTACTATGAGCTGGGAGTGGTAGACAAGTTCCATATTCCACGGGAG
Seq C2 exon
ACTCTGGTGCGTTTTGTGTATTCTGTCAGCAAAGGCTACAGGAAGATTACCTACCACAACTGGAGGCATGGCTTCAACGTTGGCCAGACCATGTTTACACTGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0),PF0771711=OB_NTP_bind=PU(6.4=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACACGTGAGATGTATGATAAAGA
R:
AGCAGTGTAAACATGGTCTGGC
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]