RnoEX0064375 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2333677-2336362:-
Coord C1 exon
chr14:2336297-2336362
Coord A exon
chr14:2335283-2335426
Coord C2 exon
chr14:2333677-2333784
Length
144 bp
Sequences
Splice sites
3' ss Seq
CACAATCTCTCTTACAGAAGGAG
3' ss Score
0.09
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAACAAGGGATCGCCTGGGGAAGGAACCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
Seq A exon
GAGGAACTTCCAGGGCCTACCAAGTTTGACATCTATGAGTTCCACTTCTCTGATCTGGAGTGCACCGAGCTGGAGCTAGTCAAATGTGGCATCCAGATGTACTACGAGCTGGGTGTAGTCCGAAAGTTCCAGATTCCCCAGGAG
Seq C2 exon
GTCCTTGTGCGCTTCCTATTCTCTGTCAGCAAAGCTTACCGAAGAATCACCTACCATAACTGGCGCCATGGCTTCAATGTGGCCCAGACCATGTTTACCCTACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'12-17,'12-16,13-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGGATCGCCTGG
R:
AGTAGGGTAAACATGGTCTGGG
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]