HsaEX0046266 @ hg19
Exon Skipping
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:8786]
Coordinates
chr4:652741-656030:+
Coord C1 exon
chr4:652741-652806
Coord A exon
chr4:654256-654402
Coord C2 exon
chr4:655923-656030
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCCCACAATCCCTCCCACAGAAG
3' ss Score
6.82
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
CCAACCAGAGCGCGCCTGGGGAAGGAGCCTGCTGACTGCGATGAGGACGAGCTGGGCGAAATCCTG
Seq A exon
AAGGAGGAGCTGCCAGGGCCCACCACATTTGACATCTACGAATTCCACTTCTCTGACCTGGAGTGCACCGAACTGGACCTGGTCAAATGTGGCATCCAGATGTACTACGAGCTGGGCGTGGTCCGAAAGTTCCAGATCCCCCAGGAG
Seq C2 exon
GTCCTGGTGCGGTTCCTGTTCTCCATCAGCAAAGGGTACCGGAGAATCACCTACCACAACTGGCGCCACGGCTTCAACGTGGCCCAGACGATGTTCACGCTGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-'21-19,'21-18,22-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGGAGCCTGCTGACT
R:
ATGAGCAGCGTGAACATCGTC
Band lengths:
155-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)