MmuEX6019416 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108424297-108426561:+
Coord C1 exon
chr5:108424297-108424362
Coord A exon
chr5:108425233-108425379
Coord C2 exon
chr5:108426454-108426561
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCCCACAATCTCTCTTACAGAAG
3' ss Score
7.95
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAACAAGGGATCGCCTTGGGAAAGAGCCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
Seq A exon
AAGGAAGAACTTCCAGGGCCGACCAAGTTTGACATCTATGAGTTCCACTTCTCTGATCTGGAGTGTACAGAGCTGGAGCTAGTCAAATGTGGCATCCAGATGTACTATGAGCTGGGTGTAGTCCGAAAGTTCCAGATTCCCCAGGAG
Seq C2 exon
GTCTTGGTGCGCTTTCTATTCTCTGTCAGCAAAGCCTATCGAAGAATCACCTACCACAACTGGCGCCACGGCTTCAATGTAGCCCAGACCATGTTTACCCTACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'24-21,'24-19,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGGATCGCCTTGG
R:
AGTAGGGTAAACATGGTCTGGG
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types