BtaEX6043058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10397663-10399551:+
Coord C1 exon
chr11:10397663-10397716
Coord A exon
chr11:10398045-10398218
Coord C2 exon
chr11:10399399-10399551
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACTCACACTGTCCTCACCAGTTC
3' ss Score
5.73
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AAAACCCAGATCACGCTGATTCCTATGAGCATTTCACTACCACTCTCTGCTAAG
Seq A exon
TTCTGGGATCGCTGCAAACTCTTCCTGATGCCCGCCAAGCACCAGCCAGACCATGCCTTCCTGCGGCACGTGCCGCTGCGCCGGATCCACCTCTTCACCCTGGTGCAGATACTCTGCTTGGCTGTGCTCTGGATCCTCAAGTCCACAATGGCCGCCATCATCTTCCCAGTCATG
Seq C2 exon
ATCCTGGGTCTCATCATTGTTCGAAGGCTTCTGGACCTCATCTTTTCCCAGCATGACCTGGCCTGGATTGACAACATCCTCCCAGAGAAGGAGAAAAAGGAGGCAGATAAGAAGAAGAGAAGGAAAGGGGCCCATGAAGACAGTGACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'30-26,'30-25,31-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(3.2=100)
A:
PF0095516=HCO3_cotransp=PD(6.3=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGATCACGCTGATTCC
R:
CTCGTCACTGTCTTCATGGGC
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]