HsaEX0059832 @ hg19
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74451967-74458435:-
Coord C1 exon
chr2:74458363-74458435
Coord A exon
chr2:74454084-74454257
Coord C2 exon
chr2:74451967-74452122
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGCCCCCGCTGTCCCCCTAGTTC
3' ss Score
8.5
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGAACAGAGAGTAACCGGCATCATCGTCTTCATCCTGACGGGAATCTCTGTCTTCCTGGCTCCCATCCTAAAG
Seq A exon
TTCTGGGAACGCTGCAAGCTCTTCCTGATGCCAGCCAAGCACCAGCCGGACCATGCCTTCCTGCGGCACGTGCCGCTGCGCCGGATCCACCTCTTCACCCTGGTGCAGATCCTCTGCCTGGCGGTGCTCTGGATCCTCAAATCCACGGTGGCTGCCATCATCTTCCCGGTCATG
Seq C2 exon
ATCCTGGGCCTCATCATCGTTCGAAGGCTTCTGGATTTCATCTTTTCCCAGCACGACCTGGCCTGGATTGACAACATCCTCCCAGAGAAGGAAAAAAAGGAGACAGACAAGAAGAGGAAGAGAAAAAAAGGGGCCCACGAGGACTGTGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687_MULTIEX2-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.168 C2=0.409
Domain overlap (PFAM):
C1:
PF0086015=Xan_ur_permease=FE(41.4=100)
A:
PF0086015=Xan_ur_permease=PD(13.8=13.8)
C2:
PF0095516=HCO3_cotransp=PD(1.9=17.3)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGAGAGTAACCGGCAT
R:
TCCTCATCACAGTCCTCGTGG
Band lengths:
228-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)