MmuEX6005138 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83295871-83297383:+
Coord C1 exon
chr6:83295871-83295939
Coord A exon
chr6:83296572-83296745
Coord C2 exon
chr6:83297219-83297383
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTATGCTATATTCTTGCCAGTTC
3' ss Score
6.7
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
TACATCCCCATGCCAGTGCTCTATGGAGTCTTCCTCTACATGGGTGTGGCCTCCCTGAATGGCATCCAG
Seq A exon
TTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCGCATTCACCTGTTCACCCTGGTGCAGATCCTCTGCCTGGCCCTGCTCTGGATCCTTAAGTCAACCATGGCTGCCATCATCTTCCCGGTCATG
Seq C2 exon
ATCCTGGGCCTTATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'33-45,'33-43,35-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.2=100)
A:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCCCATGCCAGTGCTC
R:
CATTGCCACCTCCTTCTCTGC
Band lengths:
234-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types