BtaEX6043400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15345851-15371571:+
Coord C1 exon
chr11:15345851-15345903
Coord A exon
chr11:15352090-15352255
Coord C2 exon
chr11:15371374-15371571
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTGACCTTCAATAGAGT
3' ss Score
4.41
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AATGCTGAAGCTTGGAACAATTTATCAACTTCTTATATCCGCTTAAAACAAAA
Seq A exon
AGTAAAAGCTTTTAGAACATTACAAGAAGCCCTCAAGTGCAACTATGAACATTGGCAGATCTGGGAAAACTACATTCTCACTAGCACTGATGTTGGAGAATTTTCTGAAGCCATTAAAGCTTATCATCGGCTCTTGGACTTACGAGACAAATACAAAGATACTCAG
Seq C2 exon
GTCCTTAAAATCCTGGTCAGGGCAGTGATGGATGGGATGGCCGATCGTAGTGGCGATGTTGCAACTGGCCTCAGAGGAAAGCTGCAGGAGTTATTTGGCAGAGTGACTTCAAGAGTGACGAATGATGGAGAAATCTGGAGGCTGTATGCTCAAGTGTATGGAAACGGGCAGAGTGACAAGCCTGACGAAAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(25.4=100)
A:
PF134141=TPR_11=PD(22.4=26.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCTTATATCCGCTTAAAACA
R:
TTTTCATTTTCGTCAGGCTTGTCAC
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]