RnoEX6027685 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21742990-21763627:-
Coord C1 exon
chr6:21763575-21763627
Coord A exon
chr6:21759486-21759651
Coord C2 exon
chr6:21742990-21743187
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGAAATTTGACCTTCCACAGAGT
3' ss Score
6.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AATGCTGAGGCTTGGAACAATTTATCCACTTCCTATATTCGACTGAAACAAAA
Seq A exon
AGTCAAAGCTTTTAGAACGTTACAAGAAGCTCTCAAGTGTAACTATGAACACTGGCAAATCTGGGAAAACTACATCCTCACCAGCACTGACGTCGGGGAGTTTGGGGAGGCCATCAAAGCTTACCACCGGCTCCTGGACCTGCGAGACAAATACAAAGATGTTCAG
Seq C2 exon
GTCCTTAAAATTCTGGTCAGGGCAGTGGTTAATGGTATGGCTGACCGGAGTGGAGATATTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAGTTGTTCGGCAGAGTCACTTCAAGGGTGACGAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTACATGGGAATGGGCAGAGTGAGAAGCCTGCTGAGAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'34-34,'34-32,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(25.4=100)
A:
PF134141=TPR_11=PD(22.4=26.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGAGGCTTGGAACA
R:
TCTCAGCAGGCTTCTCACTCT
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]