GgaEX1060973 @ galGal3
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32618021-32627659:-
Coord C1 exon
chr3:32627607-32627659
Coord A exon
chr3:32623926-32624091
Coord C2 exon
chr3:32618021-32618218
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTTTCATCTTTTTTATTTAGAAT
3' ss Score
9.31
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AATGCTGAGGCCTGGAACAATTTATCAACTGCATATATCAGATTAAAGCAGAA
Seq A exon
AATCAAAGCATTTCGAACCCTCCAGGAAGCGCTCAAATGCAACTATGAGCATTGGCAGATTTGGGAGAATTATCTCCTCACCAGTACAGATGTTGGAGAGTTTTCAGAAGCAATTAAAGCTTATCATCGGCTCATGGACTTAAGAGAAAAGTACAAGGACACACAG
Seq C2 exon
GTTTTGGCTATTCTGGTCAGAGCAGTAGTGGATGGAATGGCAGATCGCACTGGCGAAGCAGCAAGTGGATTGAAGGGGAAATTGCGAGAGCTGTTGGGCAGAGTGACTTCACGAGTGACAAATGATGGGGAAATCTGGAGACTTTATGCCCGACTTTATGGAAATGGACACAGTGATAGCAGTGAAGATATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'21-32,'21-31,22-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(25.4=100)
A:
PF134141=TPR_11=PD(22.4=26.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGAGGCCTGGAACAAT
R:
ATCTTCACTGCTATCACTGTGTCC
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]