DreEX6054079 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22898849-22917923:+
Coord C1 exon
chr17:22898849-22898901
Coord A exon
chr17:22903870-22904035
Coord C2 exon
chr17:22917726-22917923
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGGCAGGGA
3' ss Score
9.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AATTCAGAAGCTTGGAACAACCTTTCCACGGCCTACATCAAACTGAGAGTGAA
Seq A exon
GGAGAAGGCGTTCCGCACCCTTCAGGAAGCGCTCAAGTGTAATTATGAGCGATGGCAGATCTGGGAGAATTTCATTGCGGTGTGCGTAGACCTGGGCGAGTTCAGTGAAGCTATCAGAGCCTACCATCGGCTCATGGAGCTCAAGGACAAATACAAGGACGTGGAG
Seq C2 exon
GTTCTGGAAATCCTGGTGCAAGCAGTAGTGGATAATCTAACCGATCACCGGGGCGAACAGGCCTCCATTCTCAGACCCAAACTCCAGGAGCTTTTGGGCAGAGTGTCGTCCCGCTGCAGCACAGACGCACAGATATGGAAACAGTACGCCCGTCTTTATGGCGATGGACATAGCAACAATGCAGAAGACAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-'20-30,'20-28,21-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(25.4=100)
A:
PF134141=TPR_11=PD(22.4=26.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACCTTTCCACGGCCTAC
R:
TTTTCATTGTCTTCTGCATTGTTG
Band lengths:
235-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]