BtaEX6043422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15812265-15814703:+
Coord C1 exon
chr11:15812265-15812390
Coord A exon
chr11:15814056-15814181
Coord C2 exon
chr11:15814581-15814703
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTATATCTTTTTGTTAACAGATA
3' ss Score
7.58
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
AAATCAATGAATGTACTGTGAACCCTGACATCTGTGGAGCAGGACACTGCATTAACCTGCCAGTGAGGTATACCTGTATATGCTACGATGGCTACAAGTTCAATGAGCAACAGAGGAAATGTGTTG
Seq A exon
ATATTGATGAATGCGCTCAGGATCAACACCTTTGCTCCCAGGGACGCTGTGAAAACACTGAGGGAAGTTTCTTGTGTATTTGCCCAGCAGGATTCATGGCCAGTGAGGAGGGTACTAACTGCATAG
Seq C2 exon
ATGTCGATGAGTGTCTGAGGCCGGACGTCTGTGGGGAAGGGCACTGTGTCAATACCATGGGGGCCTTCCGATGTGAATACTGCGATAGCGGGTACCACATGACCCCAGGAGGCCAGTGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'47-36,'47-35,48-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTACTGTGAACCCTGACA
R:
CCTCGCACTGGCCTCCTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]