GgaEX1034362 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30522827-30568825:-
Coord C1 exon
chr3:30568754-30568825
Coord A exon
chr3:30541365-30541490
Coord C2 exon
chr3:30522827-30522952
Length
126 bp
Sequences
Splice sites
3' ss Seq
CATTTTTATTTCTTTTATAGATA
3' ss Score
9.77
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
CTTACCATGGATACAGTCCTATGACAGAATGCCCACAAGGCTACAAGAGGATCAATGCTACGTTTTGTCAAG
Seq A exon
ATATTAATGAGTGTAATCAGACACCTCATCTCTGTTCCCTTGGACGCTGTGAAAATACTGAAGGAAGTTTCCTATGTATTTGCCAAGCTGGATTCATGGCCAGTGAAGATGGAACTGACTGCATTG
Seq C2 exon
ATATCAATGAATGTGAGAGATCTGACCTCTGTTCACCTCATGGAGAGTGTCTAAACACAGATGGTTCCTACCAGTGCATATGTGAGCAGGGCTTTTCTGTGTCTGCAGACGGCCGAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_MULTIEX3-8/15=C1-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(24.7=90.7),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
ENSGALT00000017012fB9101
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCTATGACAGAATGCCC
R:
CTTCACAGGTTCGGCCGTC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]