GgaEX1034362 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32428474-32430690:-
Coord C1 exon
chr3:32430565-32430690
Coord A exon
chr3:32429333-32429458
Coord C2 exon
chr3:32428474-32428596
Length
126 bp
Sequences
Splice sites
3' ss Seq
CATTTTTATTTCTTTTATAGATA
3' ss Score
9.77
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
AAATCAACGAGTGTACAGTTAATCCTGATATCTGTGGAGCAGGACACTGCGTTAATTTGCCTGTGGGATACACCTGCATCTGCTACGAGGGATACAGACTTAACGATCAGCAGACAAAATGCTCTG
Seq A exon
ATATTAATGAGTGTAATCAGACACCTCATCTCTGTTCCCTTGGACGCTGTGAAAATACTGAAGGAAGTTTCCTATGTATTTGCCAAGCTGGATTCATGGCCAGTGAAGATGGAACTGACTGCATTG
Seq C2 exon
ATTTTGATGAATGTTCACGGCCTCATACTTGTGGGGAAGGTTTCTGTATAAATACTGTTGGCTCGTATAGGTGTGAATATTGTGACAGTGGGTACCAGATGAACAGGAGAGGTGAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'15-27,'15-26,16-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGAGTGTACAGTTAATCCTGA
R:
TCACATTCACCTCTCCTGTTCA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]