BtaEX6043428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15728335-15754412:+
Coord C1 exon
chr11:15728335-15728559
Coord A exon
chr11:15729946-15730214
Coord C2 exon
chr11:15754310-15754412
Length
269 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCTATCTGTTTTAGTGA
3' ss Score
9.53
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TAATTTGCCATCTTCCATGTATGAATGGAGGCCAGTGCAGTTCGAGGGACAAATGCCAGTGCCCTCCAAATTTCACAGGGAAGCTCTGTCAGATCCCAGTCCACGGGGCCAGCCTGCCTAAAGTGTATCAGCATTCCCAGCAGTCAGGCAAGGCGTTGGGAACACATGTTGTCCACTCGACACATACTTTGCCTCTGACCATGACCAGCCAGCAAGGAGTAAAAG
Seq A exon
TGAAATTTCCTCCTAACATAGTCAATATCCATGTGAAGCACCCTCCCGAGGCCTCGGTCCAGATACATCAGGTTTCAAGAGTTGATGGCCCAACAGGTCAGAAGGTTAAAGAAGCTCAACCGGGCCAGTCCCAAGCCCCTTACCAAGGCCTTCCTGTCCAGAAGACCCAGACGGTCCATTCCTCATACCAGCAAGTCATTCCTCACGTGTATCCGGTGGCTGCTAAGACCCAGCTGGGCCGGTGCTTCCAGGAAACCATTGGGTCACAG
Seq C2 exon
TGTGGCAAAGCTCTCCCTGGCCTTTCAAAGCAGGAGGACTGCTGTGGAACTGTGGGCACCTCCTGGGGCTTTCACAAATGCCAGAAATGCCCCAAGAAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'26-13,'26-11,27-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=35.5)
A:
PF0068312=TB=PU(2.5=1.1)
C2:
PF0068312=TB=FE(85.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCAGTTCGAGGGACAAA
R:
GTTTCTTGGGGCATTTCTGGC
Band lengths:
293-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]