GgaEX1034345 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30572801-30585490:-
Coord C1 exon
chr3:30585266-30585490
Coord A exon
chr3:30582283-30582560
Coord C2 exon
chr3:30572801-30572903
Length
278 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCAATTACTTTAGTGA
3' ss Score
7.94
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTATTTGCCACCTTCCCTGCATGAATGGAGGCCAGTGCAGTTCTAGAGATAAATGCCAGTGCCCTCCTAATTACACCGGCAAACTTTGTCAGATCCCCGTGCAGAATGGCAATACTCCAAAACTGTACCATCACCCACAACAAGTGAATAAGGCTGTAGGATCACAGATTATCCACTCAACTCATACTTTACCACTGACAATGTCTGGACAGCAAGGTGTAAAAG
Seq A exon
TGAAGTTCCCTCCTAACATAGTGAATATCCATGTGAAACATCCCCCTGAAGCTTCAGTTCAGATTCATCAAGTTTCAAGAATTGACAGTGCATCAACAGGACAAAAATCGAAAGTACCTCAGCCAGGACATCCACAGGTCTCTTACCAAGGTCTTCCGTATCAGAAGACCCAGAAAGGACATGCTACTTACACAAATCAACAACCCATTCCTCATGTGTTTCCTGTTTCAGTTAAAACTCAGCTTGGACGCTGCTTCCAGGAGACTATTGGAACACAG
Seq C2 exon
TGTGGCAAAGCACTTCCTGGCCTTTCTAAGCAAGAAGACTGCTGTGGAACCGTGGGTACTTCCTGGGGTTTTAACAAATGCCAGAAATGTCCCAAGAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'17-20,'17-17,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.505 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=35.5)
A:
PF0068312=TB=PU(2.3=1.1)
C2:
PF0068312=TB=FE(77.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCCAGTGCAGTTCTA
R:
TGGCTTCTTGGGACATTTCTGG
Band lengths:
303-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]