RnoEX0051357 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21354501-21378518:-
Coord C1 exon
chr6:21378294-21378518
Coord A exon
chr6:21376558-21376832
Coord C2 exon
chr6:21354501-21354603
Length
275 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCTGATCTTTGTAGTGA
3' ss Score
7.15
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TAATTTGCCATCTTCCATGTATGAATGGTGGCCAGTGCAGTTCAAGGGACAAATGTCAGTGCCCTCCAAATTTCACAGGAAAGCTTTGCCAGATCCCTGTCCTTGGTGCCAGTATGCCTAAACTCTACCAGCACGCCCAGCAGCCAGGCAAGGCACTGGGGAGTCACGTCATCCATTCCACACATACCTTGCCTCTAACCATGACCAACCAGCAAGGGGTCAAAG
Seq A exon
TGAAATTTCCCCCCAACATAGTCAATATCCATGTGAAGCATCCTCCTGAGGCTTCTGTGCAGATACACCAGGTTTCCAGAATTGATGGCCCAGTGGGCCAGAGGGTGAAAGAAGTGCAACCGGGCCAGTCCCAAGTCTCTTACCAAGGGCTGCCCGTCCAGAAGACCCAGACAGTCCATTCCACATACTCCCACCAGCAGGTCATTCCGCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGACGATGCTTCCAGGAAACCATTGGGTCACAG
Seq C2 exon
TGTGGCAAAGCGCTCCCTGGCCTTTCAAAGCAAGAGGACTGCTGTGGGACAGTGGGGACCTCCTGGGGCTTTAACAAATGCCAGAAATGCCCCAAGAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.228 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=35.5)
A:
PF0068312=TB=PU(2.3=1.1)
C2:
PF0068312=TB=FE(77.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGAATGGTGGCCAGTGCA
R:
TGCTTCTTGGGGCATTTCTGG
Band lengths:
308-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]