BtaEX6043575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20702486-20707247:-
Coord C1 exon
chr11:20707113-20707247
Coord A exon
chr11:20706761-20706865
Coord C2 exon
chr11:20702486-20702536
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTAACTTTTAAATTCCTAGGTG
3' ss Score
8.5
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATTCTCAGAGTTGGATTGGTGGAAACAATGAACCATTGACTGGCTTTACATGGCGAGGTGGTTGCGAAAGAGAAACAACAGGCATACAAGTCTGGAATGAAGTGTTTGTGATCGAGAGACCTAATGGAACAAAA
Seq A exon
GTGGCTGTGCTGCTAATGGATACCCAGGGTGCCTTTGACAGCCAGTCGACGATCAAGGATTGTGCTACAGTGTTTGCTCTGAGCACCATGACTAGCTCTGTTCAG
Seq C2 exon
GTATATAATTTGTCTCAAAATATTCAGGAAGATGATCTTCAACACTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
PF0226314=GBP=FE(12.5=100)
C2:
PF0226314=GBP=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]