GgaEX0012442 @ galGal3
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
NA
Coordinates
chr3:17398631-17405503:-
Coord C1 exon
chr3:17405369-17405503
Coord A exon
chr3:17403976-17404080
Coord C2 exon
chr3:17398631-17398681
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCAAAAATCTCTAGGTT
3' ss Score
7.51
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACTTCTCCTTGCTGGATAGGTGGAAACACTGAGCCTTTGACTGGGTTTACATGGAGAGGTGGATGTGAACGGGAAACCACTGGCATCCAGATCTGGAGTGAAGTGTTTGTAATTGATAAACCCAATGGAACGAAG
Seq A exon
GTTGCTGTACTACTCATGGATACCCAAGGTGCCTTTGATAGCCAATCCACTATCAAAGACTGTGCAACGGTTTTTGCCCTGAGCACCATGACAAGTTCTGTCCAG
Seq C2 exon
GTATACAACTTGTCCCAGAATATTCAGGAAGATGACCTTCAACATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
71%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
PF0226314=GBP=FE(12.5=100)
C2:
PF0226314=GBP=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCTTGCTGGATAGGTG
R:
CTGCAAATGTTGAAGGTCATCT
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event