MmuEX6079535 @ mm10
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:79861429-79865176:-
Coord C1 exon
chr17:79865042-79865176
Coord A exon
chr17:79864703-79864807
Coord C2 exon
chr17:79861429-79861479
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAATTTAACGAATTCCTAGGTG
3' ss Score
4.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATTCTCAAAGCTGGATTGGTGGAAACAATGAACCCTTGACTGGCTTTACGTGGCGAGGTGGTTGCGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTGTTTGTGATTGACAGACCTAATGGAACAAAA
Seq A exon
GTGGCTGTGCTGCTAATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACCATTAAAGACTGTGCGACAGTGTTTGCTCTGAGCACTATGACCAGCTCTGTGCAG
Seq C2 exon
GTATATAATTTGTCTCAGAATATTCAAGAAGATGATCTTCAACATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'10-6,'10-4,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
PF0226314=GBP=PU(17.1=96.7)
C2:
PF0226314=GBP=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types